SRX084503
GSM761758: hESC D3 Smad XL rep2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
SMAD2

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC derived mesendodermal cells
NA
NA

Attributes by original data submitter

Sample

source_name
Endoderm progenitor
cell type
endoderm progenitor derived from H9 hESC
chip antibody
Smad2/3
chip antibody vendor
Santa Cruz Biotechnology Inc

Sequenced DNA Library

library_name
GSM761758: hESC_D3_Smad_XL_rep2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
43052593
Reads aligned (%)
84.2
Duplicates removed (%)
21.6
Number of peaks
1469 (qval < 1E-05)

hg19

Number of total reads
43052593
Reads aligned (%)
83.3
Duplicates removed (%)
23.3
Number of peaks
1659 (qval < 1E-05)

Base call quality data from DBCLS SRA